Hi All,
I am using linaro-precise-ubuntu-desktop-20120626 on my ZYNQ ZC702 board which has an ARM Cortex-A9 dual core processor.
I am trying to compile Point Cloud Library and its dependent libraries like FLANN, VTK, EIGEN etc.. which are basically c++ libraries. The compiler crashes with the following error msg and i am unable to figure out where the problem is.
linaro@linaro-ubuntu-desktop:~/flann/flann-1.8.3-src/build$ make install [ 33%] Building CXX object src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o In file included from /home/linaro/flann/flann-1.8.3-src/src/cpp/flann/algorithms/kmeans_index.h:51:0, from /home/linaro/flann/flann-1.8.3-src/src/cpp/flann/algorithms/all_indices.h:38, from /home/linaro/flann/flann-1.8.3-src/src/cpp/flann/flann.hpp:45, from /home/linaro/flann/flann-1.8.3-src/src/cpp/flann/flann.h:466, from /home/linaro/flann/flann-1.8.3-src/src/cpp/flann/flann.cpp:31: /home/linaro/flann/flann-1.8.3-src/src/cpp/flann/util/logger.h:73:9: note: the mangling of ‘va_list’ has changed in GCC 4.4 c++: internal compiler error: Killed (program cc1plus) Please submit a full bug report, with preprocessed source if appropriate. See file:///usr/share/doc/gcc-4.6/README.Bugs for instructions. make[2]: *** [src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o] Error 4 make[1]: *** [src/cpp/CMakeFiles/flann_s.dir/all] Error 2 make: *** [all] Error 2 linaro@linaro-ubuntu-desktop:~/flann/flann-1.8.3-src/build$
Let me know if someone has faced similar issue or has any solution for this.
Anup,
On 10/01/13 11:16, Anup Kini wrote:
Hi All,
I am using linaro-precise-ubuntu-desktop-20120626 on my ZYNQ ZC702 board which has an ARM Cortex-A9 dual core processor.
I am trying to compile Point Cloud Library and its dependent libraries like FLANN, VTK, EIGEN etc.. which are basically c++ libraries. The compiler crashes with the following error msg and i am unable to figure out where the problem is.
linaro@linaro-ubuntu-desktop:~/flann/flann-1.8.3-src/build$ make install [ 33%] Building CXX object src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o In file included from /home/linaro/flann/flann-1.8.3-src/src/cpp/flann/algorithms/kmeans_index.h:51:0, from /home/linaro/flann/flann-1.8.3-src/src/cpp/flann/algorithms/all_indices.h:38, from /home/linaro/flann/flann-1.8.3-src/src/cpp/flann/flann.hpp:45, from /home/linaro/flann/flann-1.8.3-src/src/cpp/flann/flann.h:466, from /home/linaro/flann/flann-1.8.3-src/src/cpp/flann/flann.cpp:31: /home/linaro/flann/flann-1.8.3-src/src/cpp/flann/util/logger.h:73:9: note: the mangling of ‘va_list’ has changed in GCC 4.4 c++: internal compiler error: Killed (program cc1plus) Please submit a full bug report, with preprocessed source if appropriate. See file:///usr/share/doc/gcc-4.6/README.Bugs for instructions. make[2]: *** [src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o] Error 4 make[1]: *** [src/cpp/CMakeFiles/flann_s.dir/all] Error 2 make: *** [all] Error 2 linaro@linaro-ubuntu-desktop:~/flann/flann-1.8.3-src/build$
Let me know if someone has faced similar issue or has any solution for this.
I'm afraid I don't have enough information to give much help here. However, here are some ideas:
c++: internal compiler error: Killed (program cc1plus)
One of the causes of this is that the compiler has run out of available memory. How much memory do you have on your machine?
There are other possibilities though - so can you try and reproduce the failure outside of the make file?
It looks to me as if you are using cmake so do make VERBOSE=1 and grep the output for the g++ command line that builds flann.cpp.
Then in the build directory repeat that command adding -save-temps on the command-line. This should create a *.ii file in the current directory which contains the preprocessed source.
Try compiling the *.ii file to see if it generates the failure. If it does then please file a bug against gcc-linaro in Launchpad (if the GCC you are using is Linaro GCC) - if it isn't please file a bug in the appropriate place for that GCC distribution. Attach the *.ii file in the bug report as this will enable others to try and reproduce the problem.
Thanks,
Matt
Hi Matthew,
Thanks for the reply.
I tried with VERBOSE=1 command and the virtual memory has been exhausted. I check for the free space and its around 5.3 GB.
Let me know if there is any additional compiler tags i can use to free up or use less memory. I looked into the forums and found that similar issues were faced with 4.4 and 4.5 release but they were all baselined to 4.6.
GCC --version = gcc 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5)
--- cut above this --
No need to remake target `../src/cpp/flann/flann.hpp'. Pruning file `src/cpp/CMakeFiles/flann_s.dir/flags.make'. Finished prerequisites of target file `src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o'. Must remake target `src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o'. make[2]: Entering directory `/home/linaro/flann/flann-1.8.3-src/build' /usr/bin/cmake -E cmake_progress_report /home/linaro/flann/flann-1.8.3-src/build/CMakeFiles 3 Putting child 0x00040958 (src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o) PID 3390 on the chain. Live child 0x00040958 (src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o) PID 3390 [ 33%] Reaping winning child 0x00040958 PID 3390 Live child 0x00040958 (src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o) PID 3391 Building CXX object src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o Reaping winning child 0x00040958 PID 3391 *cd /home/linaro/flann/flann-1.8.3-src/build/src/cpp && /usr/bin/c++ -D_FLANN_VERSION=1.8.3 -DFLANN_STATIC -fopenmp -O2 -g -I/home/linaro/flann/flann-1.8.3-src/src/cpp -Wall -Wno-unknown-pragmas -Wno-unused-function -fPIC -o CMakeFiles/flann_s.dir/flann/flann.cpp.o -c /home/linaro/flann/flann-1.8.3-src/src/cpp/flann/flann.cpp* Live child 0x00040958 (src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o) PID 3393 In file included from /home/linaro/flann/flann-1.8.3-src/src/cpp/flann/algorithms/kmeans_index.h:51:0, from /home/linaro/flann/flann-1.8.3-src/src/cpp/flann/algorithms/all_indices.h:38, from /home/linaro/flann/flann-1.8.3-src/src/cpp/flann/flann.hpp:45, from /home/linaro/flann/flann-1.8.3-src/src/cpp/flann/flann.h:466, from /home/linaro/flann/flann-1.8.3-src/src/cpp/flann/flann.cpp:31: */home/linaro/flann/flann-1.8.3-src/src/cpp/flann/util/logger.h:73:9: note: the mangling of ‘va_list’ has changed in GCC 4.4 virtual memory exhausted: Cannot allocate memory Reaping losing child 0x00040958 PID 3393 * make[2]: *** [src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o] Error 1 Removing child 0x00040958 PID 3393 from chain. make[2]: Leaving directory `/home/linaro/flann/flann-1.8.3-src/build' Reaping losing child 0x00045828 PID 3389 make[1]: *** [src/cpp/CMakeFiles/flann_s.dir/all] Error 2 Removing child 0x00045828 PID 3389 from chain. make[1]: Leaving directory `/home/linaro/flann/flann-1.8.3-src/build' Reaping losing child 0x000382c0 PID 3385 make: *** [all] Error 2 Removing child 0x000382c0 PID 3385 from chain. linaro@linaro-ubuntu-desktop:~/flann/flann-1.8.3-src/build$
When i run it on my laptop it does not require more than 300 mb to compile.
I am not sure what the problem is on my board (ZNQ ZC702). It has an SD Card with 7.4 gb for the filesystem and 5.3 GB is free.
On 10 January 2013 13:12, Matthew Gretton-Dann < matthew.gretton-dann@linaro.org> wrote:
Anup,
On 10/01/13 11:16, Anup Kini wrote:
Hi All,
I am using linaro-precise-ubuntu-desktop-**20120626 on my ZYNQ ZC702 board which has an ARM Cortex-A9 dual core processor.
I am trying to compile Point Cloud Library and its dependent libraries like FLANN, VTK, EIGEN etc.. which are basically c++ libraries. The compiler crashes with the following error msg and i am unable to figure out where the problem is.
linaro@linaro-ubuntu-desktop:~**/flann/flann-1.8.3-src/build$ make install [ 33%] Building CXX object src/cpp/CMakeFiles/flann_s.** dir/flann/flann.cpp.o In file included from /home/linaro/flann/flann-1.8.**3-src/src/cpp/flann/** algorithms/kmeans_index.h:51:**0, from /home/linaro/flann/flann-1.8.**3-src/src/cpp/flann/** algorithms/all_indices.h:38, from /home/linaro/flann/flann-1.8.**3-src/src/cpp/flann/flann.hpp:**45, from /home/linaro/flann/flann-1.8.**3-src/src/cpp/flann/flann.h:**466, from /home/linaro/flann/flann-1.8.**3-src/src/cpp/flann/flann.cpp:**31: /home/linaro/flann/flann-1.8.**3-src/src/cpp/flann/util/**logger.h:73:9: note: the mangling of ‘va_list’ has changed in GCC 4.4 c++: internal compiler error: Killed (program cc1plus) Please submit a full bug report, with preprocessed source if appropriate. See file:///usr/share/doc/gcc-4.6/**README.Bugs for instructions. make[2]: *** [src/cpp/CMakeFiles/flann_s.**dir/flann/flann.cpp.o] Error 4 make[1]: *** [src/cpp/CMakeFiles/flann_s.**dir/all] Error 2 make: *** [all] Error 2 linaro@linaro-ubuntu-desktop:~**/flann/flann-1.8.3-src/build$
Let me know if someone has faced similar issue or has any solution for this.
I'm afraid I don't have enough information to give much help here. However, here are some ideas:
c++: internal compiler error: Killed (program cc1plus)
One of the causes of this is that the compiler has run out of available memory. How much memory do you have on your machine?
There are other possibilities though - so can you try and reproduce the failure outside of the make file?
It looks to me as if you are using cmake so do make VERBOSE=1 and grep the output for the g++ command line that builds flann.cpp.
Then in the build directory repeat that command adding -save-temps on the command-line. This should create a *.ii file in the current directory which contains the preprocessed source.
Try compiling the *.ii file to see if it generates the failure. If it does then please file a bug against gcc-linaro in Launchpad (if the GCC you are using is Linaro GCC) - if it isn't please file a bug in the appropriate place for that GCC distribution. Attach the *.ii file in the bug report as this will enable others to try and reproduce the problem.
Thanks,
Matt
-- Matthew Gretton-Dann Toolchain Working Group, Linaro
On 10/01/13 13:38, Anup Kini wrote:
Hi Matthew,
Thanks for the reply.
I tried with VERBOSE=1 command and the virtual memory has been exhausted. I check for the free space and its around 5.3 GB.
Let me know if there is any additional compiler tags i can use to free up or use less memory. I looked into the forums and found that similar issues were faced with 4.4 and 4.5 release but they were all baselined to 4.6.
GCC --version = gcc 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5)
--- cut above this --
No need to remake target `../src/cpp/flann/flann.hpp'. Pruning file `src/cpp/CMakeFiles/flann_s.dir/flags.make'. Finished prerequisites of target file `src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o'. Must remake target `src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o'. make[2]: Entering directory `/home/linaro/flann/flann-1.8.3-src/build' /usr/bin/cmake -E cmake_progress_report /home/linaro/flann/flann-1.8.3-src/build/CMakeFiles 3 Putting child 0x00040958 (src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o) PID 3390 on the chain. Live child 0x00040958 (src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o) PID 3390 [ 33%] Reaping winning child 0x00040958 PID 3390 Live child 0x00040958 (src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o) PID 3391 Building CXX object src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o Reaping winning child 0x00040958 PID 3391 *cd /home/linaro/flann/flann-1.8.3-src/build/src/cpp && /usr/bin/c++ -D_FLANN_VERSION=1.8.3 -DFLANN_STATIC -fopenmp -O2 -g -I/home/linaro/flann/flann-1.8.3-src/src/cpp -Wall -Wno-unknown-pragmas -Wno-unused-function -fPIC -o CMakeFiles/flann_s.dir/flann/flann.cpp.o -c /home/linaro/flann/flann-1.8.3-src/src/cpp/flann/flann.cpp* Live child 0x00040958 (src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o) PID 3393 In file included from /home/linaro/flann/flann-1.8.3-src/src/cpp/flann/algorithms/kmeans_index.h:51:0, from /home/linaro/flann/flann-1.8.3-src/src/cpp/flann/algorithms/all_indices.h:38, from /home/linaro/flann/flann-1.8.3-src/src/cpp/flann/flann.hpp:45, from /home/linaro/flann/flann-1.8.3-src/src/cpp/flann/flann.h:466, from /home/linaro/flann/flann-1.8.3-src/src/cpp/flann/flann.cpp:31: */home/linaro/flann/flann-1.8.3-src/src/cpp/flann/util/logger.h:73:9: note: the mangling of ‘va_list’ has changed in GCC 4.4 virtual memory exhausted: Cannot allocate memory Reaping losing child 0x00040958 PID 3393 * make[2]: *** [src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o] Error 1 Removing child 0x00040958 PID 3393 from chain. make[2]: Leaving directory `/home/linaro/flann/flann-1.8.3-src/build' Reaping losing child 0x00045828 PID 3389 make[1]: *** [src/cpp/CMakeFiles/flann_s.dir/all] Error 2 Removing child 0x00045828 PID 3389 from chain. make[1]: Leaving directory `/home/linaro/flann/flann-1.8.3-src/build' Reaping losing child 0x000382c0 PID 3385 make: *** [all] Error 2 Removing child 0x000382c0 PID 3385 from chain. linaro@linaro-ubuntu-desktop:~/flann/flann-1.8.3-src/build$
When i run it on my laptop it does not require more than 300 mb to compile.
I am not sure what the problem is on my board (ZNQ ZC702). It has an SD Card with 7.4 gb for the filesystem and 5.3 GB is free.
That 5.3GB won't be used for virtual memory unless you create a swap partition. To find out how much memory your board has (assuming you are running Linux on it use the 'free' command.
If your board has significantly more than 300MB available then can you please raise a bug report in Launchpad. I don't think we will get this fixed in 4.6 - but it is a good test case to check memory usage in 4.8.
The difference in memory usage between x86 and ARM can be down to the different targets being compiled for requiring different code generation strategies.
As for working round the issue - my suggestion is either: a) Use a cross compiler (so build on x86 targetting ARM); or b) split the source file into many smaller files.
Thanks,
Matt
The free command returned the following details. Does this mean the system has no SWAP ??
total used free shared buffers cached Mem: 1029884 440069 589016 0 16364 138784 -/+ buffers/cache : 284920 744164 swap: 0 0 0
On 10 January 2013 14:53, Matthew Gretton-Dann < matthew.gretton-dann@linaro.org> wrote:
On 10/01/13 13:38, Anup Kini wrote:
Hi Matthew,
Thanks for the reply.
I tried with VERBOSE=1 command and the virtual memory has been exhausted. I check for the free space and its around 5.3 GB.
Let me know if there is any additional compiler tags i can use to free up or use less memory. I looked into the forums and found that similar issues were faced with 4.4 and 4.5 release but they were all baselined to 4.6.
GCC --version = gcc 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5)
--- cut above this --
No need to remake target `../src/cpp/flann/flann.hpp'. Pruning file `src/cpp/CMakeFiles/flann_s.**dir/flags.make'. Finished prerequisites of target file `src/cpp/CMakeFiles/flann_s.**dir/flann/flann.cpp.o'. Must remake target `src/cpp/CMakeFiles/flann_s.** dir/flann/flann.cpp.o'. make[2]: Entering directory `/home/linaro/flann/flann-1.8.**3-src/build' /usr/bin/cmake -E cmake_progress_report /home/linaro/flann/flann-1.8.**3-src/build/CMakeFiles 3 Putting child 0x00040958 (src/cpp/CMakeFiles/flann_s.** dir/flann/flann.cpp.o) PID 3390 on the chain. Live child 0x00040958 (src/cpp/CMakeFiles/flann_s.** dir/flann/flann.cpp.o) PID 3390 [ 33%] Reaping winning child 0x00040958 PID 3390 Live child 0x00040958 (src/cpp/CMakeFiles/flann_s.** dir/flann/flann.cpp.o) PID 3391 Building CXX object src/cpp/CMakeFiles/flann_s.**dir/flann/flann.cpp.o Reaping winning child 0x00040958 PID 3391 *cd /home/linaro/flann/flann-1.8.**3-src/build/src/cpp && /usr/bin/c++
-D_FLANN_VERSION=1.8.3 -DFLANN_STATIC -fopenmp -O2 -g -I/home/linaro/flann/flann-1.**8.3-src/src/cpp -Wall -Wno-unknown-pragmas -Wno-unused-function -fPIC -o CMakeFiles/flann_s.dir/flann/**flann.cpp.o -c /home/linaro/flann/flann-1.8.**3-src/src/cpp/flann/flann.cpp*
Live child 0x00040958 (src/cpp/CMakeFiles/flann_s.** dir/flann/flann.cpp.o) PID 3393 In file included from /home/linaro/flann/flann-1.8.**3-src/src/cpp/flann/** algorithms/kmeans_index.h:51:**0, from /home/linaro/flann/flann-1.8.**3-src/src/cpp/flann/** algorithms/all_indices.h:38, from /home/linaro/flann/flann-1.8.**3-src/src/cpp/flann/flann.hpp:**45, from /home/linaro/flann/flann-1.8.**3-src/src/cpp/flann/flann.h:**466, from /home/linaro/flann/flann-1.8.**3-src/src/cpp/flann/flann.cpp:**31: */home/linaro/flann/flann-1.8.**3-src/src/cpp/flann/util/**logger.h:73:9: note:
the mangling of ‘va_list’ has changed in GCC 4.4 virtual memory exhausted: Cannot allocate memory Reaping losing child 0x00040958 PID 3393 *
make[2]: *** [src/cpp/CMakeFiles/flann_s.**dir/flann/flann.cpp.o] Error 1 Removing child 0x00040958 PID 3393 from chain. make[2]: Leaving directory `/home/linaro/flann/flann-1.8.**3-src/build' Reaping losing child 0x00045828 PID 3389 make[1]: *** [src/cpp/CMakeFiles/flann_s.**dir/all] Error 2 Removing child 0x00045828 PID 3389 from chain. make[1]: Leaving directory `/home/linaro/flann/flann-1.8.**3-src/build' Reaping losing child 0x000382c0 PID 3385 make: *** [all] Error 2 Removing child 0x000382c0 PID 3385 from chain. linaro@linaro-ubuntu-desktop:~**/flann/flann-1.8.3-src/build$
When i run it on my laptop it does not require more than 300 mb to compile.
I am not sure what the problem is on my board (ZNQ ZC702). It has an SD Card with 7.4 gb for the filesystem and 5.3 GB is free.
That 5.3GB won't be used for virtual memory unless you create a swap partition. To find out how much memory your board has (assuming you are running Linux on it use the 'free' command.
If your board has significantly more than 300MB available then can you please raise a bug report in Launchpad. I don't think we will get this fixed in 4.6 - but it is a good test case to check memory usage in 4.8.
The difference in memory usage between x86 and ARM can be down to the different targets being compiled for requiring different code generation strategies.
As for working round the issue - my suggestion is either: a) Use a cross compiler (so build on x86 targetting ARM); or b) split the source file into many smaller files.
Thanks,
Matt
-- Matthew Gretton-Dann Toolchain Working Group, Linaro
On 10/01/13 14:05, Anup Kini wrote:
The free command returned the following details. Does this mean the system has no SWAP ??
total used free shared bufferscached Mem: 1029884 440069 589016 0 16364 138784 -/+ buffers/cache : 284920 744164 swap: 0 0 0
Yes this means you have no swap on your system.
But you do have 1GB of memory of which about 575 MB is free, so I would still say the evidence is that this test case is using excessive amounts of memory and so raising a bug report would be useful.
Thanks,
Matt
Thanks for the support Matthew. I have raised a bug report at the launchpad.
I have tried the cross compiling option, but it fails due to other system dependent issues on x86 platform. Also, The library as such has very little support fro cross compiling.
On 10 January 2013 15:13, Matthew Gretton-Dann < matthew.gretton-dann@linaro.org> wrote:
On 10/01/13 14:05, Anup Kini wrote:
The free command returned the following details. Does this mean the system has no SWAP ??
total used free shared bufferscached Mem: 1029884 440069 589016 0 16364 138784 -/+ buffers/cache : 284920 744164 swap: 0 0 0
Yes this means you have no swap on your system.
But you do have 1GB of memory of which about 575 MB is free, so I would still say the evidence is that this test case is using excessive amounts of memory and so raising a bug report would be useful.
Thanks,
Matt
-- Matthew Gretton-Dann Toolchain Working Group, Linaro
linaro-toolchain@lists.linaro.org
-
Anup Kini -
Matthew Gretton-Dann